Here's the charge sheet from Gitmo (remember the focus WAS on him being an enemy combatant) :
http://news.findlaw.com/wsj/docs/ter...20808chrgs.pdf
Charges are attacking civilians, attacking civilian objects, intentionally causing serious bodily injury, murder in violation of the law of war, destruction of property in violation of the law of war, hijacking or hazarding a vessel or aircraft, terrorism, and providing material support for terrorism
Can't seem to Googlefu the civilian indictment of US v. KSM though but surely the charges will be significantly different.
I'm sure his defense will be sponsored by some wealthy Middle Eastern Islamic defense fund.